Class RandomNaSequenceProvider

Nucleic acid sequence provider generating random nucleobase type on each read

Hierarchy

NucleicAcidSequenceProvider
- RandomNaSequenceProvider

Index

Constructors

constructor

Properties

allowedValues

Methods

Constructors

constructor

new RandomNaSequenceProvider(allowedValues?: NucleobaseType[]): RandomNaSequenceProvider

- Defined in backend/src/catana/nanomodeling/sequence-providers/random-na-sequence-provider.ts:8
Parameters
- Default value allowedValues: NucleobaseType[] = [NucleobaseType.A, NucleobaseType.T, NucleobaseType.C, NucleobaseType.G]
  
  nucleobases included in the random generation
Returns RandomNaSequenceProvider

Properties

allowedValues

allowedValues: NucleobaseType[]

Methods

Protected _get

_get(index: number): NucleobaseType

Overrides NucleicAcidSequenceProvider._get
- Defined in backend/src/catana/nanomodeling/sequence-providers/random-na-sequence-provider.ts:20
override

Parameters
- index: number
Returns NucleobaseType

get

get(index: number): NucleobaseType

Inherited from NucleicAcidSequenceProvider.get
- Defined in backend/src/catana/nanomodeling/sequence-providers/nucleic-acid-sequence-provider.ts:13
Returns nucleobase type at given index

Parameters
- index: number
  
  positon in the underlying sequence to read
Returns NucleobaseType

nucleobase type at given index

getNext

getNext(): NucleobaseType

Overrides NucleicAcidSequenceProvider.getNext
- Defined in backend/src/catana/nanomodeling/sequence-providers/random-na-sequence-provider.ts:25
override

Returns NucleobaseType

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