Class FastaSequenceProvider

Nucleic acid sequence provider initialized with a FASTA sequence

Hierarchy

NucleicAcidSequenceProvider
- FastaSequenceProvider

Index

Constructors

constructor

Properties

Accessors

length

Methods

Constructors

constructor

new FastaSequenceProvider(fastaSequence: string | NucleobaseType[]): FastaSequenceProvider

- Defined in backend/src/catana/nanomodeling/sequence-providers/fasta-sequence-provider.ts:9
Parameters
- fastaSequence: string | NucleobaseType[]
  
  sequence to be used by this provider
Returns FastaSequenceProvider

Properties

Private _currIndex

_currIndex: number = 0

Private _ntTypesSequence

_ntTypesSequence: Array<NucleobaseType>

Accessors

length

get length(): number

- Defined in backend/src/catana/nanomodeling/sequence-providers/fasta-sequence-provider.ts:31
Returns number

length of the underlying FASTA sequence

Methods

Protected _get

_get(index: number): NucleobaseType

Overrides NucleicAcidSequenceProvider._get
- Defined in backend/src/catana/nanomodeling/sequence-providers/fasta-sequence-provider.ts:36
override

Parameters
- index: number
Returns NucleobaseType

get

get(index: number): NucleobaseType

Inherited from NucleicAcidSequenceProvider.get
- Defined in backend/src/catana/nanomodeling/sequence-providers/nucleic-acid-sequence-provider.ts:13
Returns nucleobase type at given index

Parameters
- index: number
  
  positon in the underlying sequence to read
Returns NucleobaseType

nucleobase type at given index

getNext

getNext(): NucleobaseType

Overrides NucleicAcidSequenceProvider.getNext
- Defined in backend/src/catana/nanomodeling/sequence-providers/fasta-sequence-provider.ts:41
override

Returns NucleobaseType

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