Class CgMonomerProxy

Monomer proxy class provides an abstracted view onto a single monomer data

Hierarchy

CgMonomerProxy
- CgAminoAcidProxy
- CgNucleotideProxy

Index

Constructors

constructor

Properties

Accessors

Methods

Constructors

constructor

new CgMonomerProxy(index: number, parentPolymer: CgPolymer): CgMonomerProxy

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:10
Parameters
- index: number
  
  index corresponding to the position of this monomer's data in the parent polymer's store
- parentPolymer: CgPolymer
  
  parent polymer of this monomer
Returns CgMonomerProxy

Properties

Private _index

_index: number

Private _parentPolymer

_parentPolymer: CgPolymer

Accessors

globalId

get globalId(): number
set globalId(newId: number): any

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:53
Returns number

Global ID of this monomer
- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:58
Parameters
- newId: number
  
  New global ID of this monomer
Returns any

Global ID of this monomer

index

get index(): number
set index(newIdx: number): void

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:25
Returns number

Index stores the location of this residue data in the corresponding store
- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:32
Parameters
- newIdx: number
  
  Index to which this proxy refers to
Returns void

Index stores the location of this residue data in the corresponding store

Protected parentPolymer

get parentPolymer(): CgPolymer
set parentPolymer(newChain: CgPolymer): void

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:74
Returns CgPolymer

Parent polymer
- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:81
Parameters
- newChain: CgPolymer
  
  Sets new parent polymer
Returns void

Parent polymer

parentStructure

get parentStructure(): CgStructure | undefined

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:39
Returns CgStructure | undefined

Parent structure of this monomer if set, otherwise undefined

pdbId

get pdbId(): number
set pdbId(newId: number): any

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:64
Returns number

residue index of the corresponding residue in atomistic structure belonging to the parent coarse-grained structure. If no valid data exist, returns -1.
- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:69
Parameters
- newId: number
  
  residue index of the corresponding all-atom residue
Returns any

residue index of the corresponding residue in atomistic structure belonging to the parent coarse-grained structure. If no valid data exist, returns -1.

position

get position(): Vector3

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:144
Returns Vector3

backbone position corresponding to this monomer

residueName

get residueName(): string

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:102
Returns string

PDB-compatible residue name of this monomer

residueNumber

get residueNumber(): number

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:107
Returns number

structure-wise unique number corresponding to this residue

x

get x(): number

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:123
Returns number

x-coordinate of this monomer's backbone

y

get y(): number

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:130
Returns number

y-coordinate of this monomer's backbone

z

get z(): number

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:137
Returns number

z-coordinate of this monomer's backbone

Methods

Abstract applyMatrixTransformation

applyMatrixTransformation(matrix: Matrix4): void

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:118
Applies transformation to the coordinates of this monomer

Parameters
- matrix: Matrix4
  
  Transformation matrix
Returns void

Abstract clone

clone(): CgMonomerProxy

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:150
Clones this proxy to make a new class instance refering to the same element

Returns CgMonomerProxy

getParentPolymer

getParentPolymer(): CgPolymer

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:46
Returns CgPolymer

Parent polymer

Protected isChainEnd

isChainEnd(): boolean

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:88
Returns boolean

True if this monomer lies at the end of the chain, false otherwise.

Protected isChainStart

isChainStart(): boolean

- Defined in backend/src/catana/data_model/proxy/cg-monomer-proxy.ts:95
Returns boolean

True if this monomer lies at the start of the chain, false otherwise.

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